PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 284aa    MW: 32002.4 Da    PI: 7.0031
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754530genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-074585438
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ +e+ +++l C  ++  lC++C +e H        H+
  676754530 45 IQCDVCEKAPATLICCADEAALCAKCDVEVHAAnklaskHQ 85
               57*****************************6556666665 PP

2zf-B_box26.91e-0897128435
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 
                + C+ + ek + +fC +++ llC+dC +++H 
  676754530  97 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 128
                68*****************************4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.2574289IPR000315B-box-type zinc finger
SMARTSM003361.3E-114289IPR000315B-box-type zinc finger
PfamPF006433.0E-54586IPR000315B-box-type zinc finger
CDDcd000213.25E-74589No hitNo description
PROSITE profilePS501199.27194141IPR000315B-box-type zinc finger
SMARTSM003361.2E-1394141IPR000315B-box-type zinc finger
PfamPF006432.8E-697137IPR000315B-box-type zinc finger
CDDcd000212.59E-797140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MITSKNEIKA RETEKKRNKQ SRRKRRRVGP NKLKGLAIIS IHMKIQCDVC EKAPATLICC  60
ADEAALCAKC DVEVHAANKL ASKHQRLFLD SLSTQFPPCD ICLEKAAFIF CVEDRALLCR  120
DCDEATHAPN TRSANHQRFL ATGIRVALSS TSCSKEVEMN HFDPSNQQNA KQILSKPPIQ  180
QPAAPSPPWA GDEFFRYSDL ECSNKQKEQL DLGELDWLAE MGFFGDQPDQ ETLTAAEVPE  240
LSVSHLAHVH TYNRPMKSNV SNKKPRLEVR YDDDEEHFLV PDLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRRR
22327KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529610.0AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410272.11e-168hypothetical protein EUTSA_v10017169mg
SwissprotQ9SID11e-161BBX25_ARATH; B-box zinc finger protein 25
TrEMBLV4LME71e-168V4LME7_EUTSA; Uncharacterized protein
STRINGBra018249.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-153salt tolerance homologue